Category Archives: Methyl-specific Antibodies

What was once surprising is now established. DNA methylation is not static after imprinting. All genes are not silenced “forever” through DNA methylation.  But how does this dynamic and reversible mechanism work? As the hypothesis goes, 5hmC is a step in the de-methylation process initiated by Tet dioxygenases.  The news today is that 5hmC is more than just a quick step, it has function. In Dynamic hydroxymethylation of deoxyribonucleic acid marks differentiation-associated enhancers. (2012) Nucleic Acids Research, 1-11. A.A. Serandour & S. Avner et al. show that conversion of 5mC to 5hmC activates enhancers – even pointing to it as an early step in the enhancer activation process. Can we all say functional signalling mark? Some of you might be saying … Continue reading

Posted in Cellular Biology, Conformation Capture, DNA Methylation, Genomewide Methylation Profiling, Histone Modifications, Hydroxymethylation, Methyl-specific Antibodies, Methylated DNA Capture, Next Gen Sequencing, Transcriptome microarray, chIP | Tagged , , , , , | Leave a comment

They say beauty is in the eye of the beholder. For me, well done immunolocalization images demonstrate scientific artistry. Last week I was pleased to find this paper, Global 5-hydroxymethylcytosine content is significantly reduced in tissue stem/progenitor cell compartments and in human cancers Oncotarget Sept. 2, 2011 (Haffner et al), posted on the Dr. Denise O’Keefe lab blog (E3 member). This research showed that fully differentiated adult tissues had the highest levels of 5-hmC, while stem cells had very low levels. There was uniform loss of 5hmC in cancer tissues, matched to normal adult tissues. Reductions in 5-hmC can occur independently of 5mC in solid tumors. Global loss of 5-hmC could be an early event of carcinogenesis. The work came … Continue reading

Posted in DNA Methylation, Flow Cytometry, Imaging, Immunofluorescence, Immunohistochemistry, Methyl-specific Antibodies, New Lab Methods, Oncology, Pathology, Stem Cells | Tagged , | Leave a comment

Last week’s excitement about the discovery of “seventh” and “eighth” DNA bases might’ve obscured parts of that work that shed a little more light on a very murky corner of epigenetics’ cytosine modifications — “Where do the methyls go?” And related research also published last week gets a bit closer to answering, “What does 5-hydroxymethyl-C really do, anyway?” The first, a Science paper by Yi Zhang and his group at the University of North Carolina, does introduce two new cytosine modifications, 5-formylcytosine and 5-carboxylcytosine. But more interesting, I think, is that the group gets halfway through proving a plausible mechanism for cytosine demethylation, which no one’s demonstrated yet. And during the same week, researchers at UCLA and New England Biolabs … Continue reading

Posted in Applications, DNA Methylation, Developmental Biology, Gene Regulation, Genomewide Methylation Profiling, Methyl-specific Antibodies, Methyltransferases, Methyltransferases | Tagged , , , , | Leave a comment