Category Archives: In Utero

The Epigenetics of Smoking During Pregnancy

Posted on August 10, 2012 by Chris Womack

Looking at around 474,000 CpG sites in cord blood from 1,062 newborns, a multi-institutional group of researchers took the first broad look at what happens epigenetically when pregnant moms smoke. Typical of epigenome scans, this one doesn’t make any clear links between methylation states and any diseases, though the researchers make a couple plausible connections, for example, suggesting that demethylation affects the AHRR gene’s role in fibroblast apoptosis in lungs. In any case, the data will be very useful to epigeneticists in general. Researchers from the NIH National Institute of Environmental Health Sciences, the Norwegian Institute of Public Health, the Haukeland University Hospital in Bergen, Norway, Duke University, and several other institutions published the paper online at the NIEHS website … Continue reading →

Posted in Applications, DNA Methylation, Developmental Biology, Gene Regulation, Genomewide Methylation Profiling, In Utero | Tagged , , , , | Leave a comment

Twin studies, Autism Risk, Epigenetic Molecular Trails in Utero

Posted on April 17, 2012 by Nicole Kelesoglu

Researchers are keen to identify environmental causes of autism, using epigenetics. Twin studies in particular offer unique opportunities for clever researchers. The eye opening results of the California Autism Twins Study (CATS) study, were that autism had a ~60% genetics basis and a ~40% environmental basis. This news has facilitated the idea that there is an epigenetic molecular trail to follow, to identify environmental causes of autism. One of those environmental factors correlating to autism risk is low birth weight. Yes, yes, well that seems to makes sense when you think of it in the context of premature births. But here again, twin studies show us further complexity. (As a side bar check out this blog post from Genomes Unzipped,  … Continue reading →

Posted in Autism, DNA Extraction / Purification, DNA Methylation, Developmental Biology, Immunohistochemistry, In Utero, Neuroscience, Twin studies | Tagged , , , | Leave a comment

Smoking and Placental Transcription–an Epigenetic Route to Low Birth Weight?

Posted on December 2, 2011 by Chris Womack

In an interesting little study published last month in the journal Epigenetics, researchers at Baylor College of Medicine compared transcriptomes and methylomes of placentas from 18 smokers and 18 non-smokers — checking for mRNA expression changes that matched methylations (or demethylations) in nearby promoters or enhancers. (Nearby the up- or down-regulated gene, that is.) It’s a new approach because no one’s ever related maternal smoking with transcriptome-wide altered expression and methylation changes at 27,000 CpG sites. That wide search netted 622 genes that showed significantly different expression patterns between the two groups, and 1,024 CpG sites that showed significant methylation differences. And after clearing away the … uh … statistical smoke, the BCM scientists discovered that at least six CpG … Continue reading →

Posted in DNA Methylation, Developmental Biology, Gene Regulation, Genomewide Methylation Profiling, In Utero, Sodium Bisulfite Sequencing, Transcriptome microarray | Tagged , , , | 1 Comment

Identical Twins are Not Identically Imprinted : Epigenome in Context of the Genome

Posted on October 28, 2011 by Nicole Kelesoglu

As is the case with their fingerprints, imprinted genes are NOT identical in identical twins. In fact, methylation levels vary notably, yet randomly, in localized imprinted regulatory regions, between MZ twins. Even cooler, a new epigenetics clue came out of demonstrating this imprinting variability. This month in PloS one, the collaborators from the Garvin Institute, the University of Nijmegen Medical Centre, the Queensland Institute of Medical Research and St. Vincent’s Clinical School, University of NSW, produced the paper Impact of the Genome on the Epigenome Is Manifested in DNA Methylation Patterns of Imprinted Regions in Monozygotic and Dizygotic Twins. by Marcel W. Coolen et al. Blood samples from 128 pairs of identical, and 128 pairs of fraternal teen aged twins, … Continue reading →

Posted in Autism, Bioinformatics, DNA Methylation, Developmental Biology, Divergent Transcription, Gene Regulation, Gene Silencing, Genomewide Methylation Profiling, In Utero, Mass Spec, Methylation Specific PCR, Next Gen Sequencing, Sodium Bisulfite Sequencing, Transcriptome microarray | Tagged , , , | Leave a comment

Are your Allergies an Evolutionary Advantage?

Posted on May 13, 2011 by Nicole Kelesoglu

Many of my neighbors spent a long day outside on Mother’s day, in their running shoes…chasing a black bolt of lighting in and out of the woods, and down the road. But who could really blame that run away miniature schnauzer? It’s finally spring! Of course, there are some of us (up to 30%) who can’t enjoy spring time quite as much, due to our seasonal allergies.  The epigenetic inheritance of allergies makes sense conceptually.  Allergic disease overall, which includes atopic asthma, allergic rhinoconjunctivitis, anaphylactic reactions and food allergies, is on the rise generationally. Allergies have some genetic basis, but triggers and timing vary, even between twins. Allergy suffers can blame their high levels of total serum IgE antibodies, for … Continue reading →

Posted in Cellular Biology, Developmental Biology, Evolutionary Epigenetics, Genetics, Immunology, In Utero, Pathology | Leave a comment

Is Epigenetics the Basis of the ‘Autism Epidemic’?

Posted on May 1, 2011 by Nicole Kelesoglu

There is a proverb, said by the famous British historical literary critic, who published the first English Dictionary. “The road to hell is paved with good intentions.” – Samuel Johnson (1709-1784) Today is the last day of April, which has been autism awareness month. I think it’s fitting to point out a provocative hypothesis of autism causation. Studies of folic acid metabolism and autism have been published over the past several years, by various authors. This recent paper King CR. A novel embryological theory of autism causation involving endogenous biochemicals capable of initiating cellular gene transcription. A possible link between twelve autism risk factors and the autism ‘epidemic’ Med hypotheses (2011) is interesting, since it presents a hypotheses that autism … Continue reading →

Posted in Animal Models, Autism, DNA Methylation, Developmental Biology, In Utero, Neuroscience | Tagged , , | 8 Comments